Just as the world faced it's darkest hour, about to be overtaken by chaos with time itself being destroyed, a miracle occurred. Touched by the humans naming their Ark after him, the god Bhunivelze pushed back the chaos into Valhalla, and sealed it away once more.

Much damage was done, and time was pasted together completely wrong. Cocoon once more floats in the sky, under Fal'cie rule, Oerba and several other pulse civilizations that were wiped out during the War of Transgression now flourish, occupied by people who had long ago dies.

Academia is back, once more under the rule of the Proto-Fal'cie Adam, and Bhunivelze floats in the sky as well. This patchwork world needs heroes to rise. The Fal'cie must be overthrown all over again, and the Proto-Falcie Adam must be stopped as well if true peace is going to be brought to the world.